Identification of SARS-like coronaviruses in horseshoe bats ( Rhinolophus hipposideros ) in Slovenia
Identifieur interne : 002802 ( Main/Exploration ); précédent : 002801; suivant : 002803Identification of SARS-like coronaviruses in horseshoe bats ( Rhinolophus hipposideros ) in Slovenia
Auteurs : Danijela Rihtari [Slovénie] ; Peter Hostnik [Slovénie] ; Andrej Steyer [Slovénie] ; Jože Grom [Slovénie] ; Ivan Toplak [Slovénie]Source :
- Archives of Virology [ 0304-8608 ] ; 2010-04-01.
Descripteurs français
- KwdFr :
- ARN viral (génétique), ARN viral (isolement et purification), Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Données de séquences moléculaires, Fèces (virologie), Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Phylogénie, Produits du gène pol (génétique), Prévalence, RT-PCR, Similitude de séquences, Slovénie (épidémiologie).
- MESH :
- génétique : ARN viral, Coronavirus, Produits du gène pol.
- isolement et purification : ARN viral, Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Fèces, Infections à coronavirus.
- épidémiologie : Infections à coronavirus, Slovénie.
- Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Coronavirus, Données de séquences moléculaires, Phylogénie, Prévalence, RT-PCR, Similitude de séquences.
- Wicri :
- geographic : Slovénie.
English descriptors
- KwdEn :
- Animals, Chiroptera (virology), Cluster Analysis, Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (epidemiology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Feces (virology), Gene Products, pol (genetics), Molecular Sequence Data, Phylogeny, Prevalence, RNA, Viral (genetics), RNA, Viral (isolation & purification), Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Sequence Homology, Slovenia (epidemiology).
- MESH :
- chemical , genetics : Gene Products, pol, RNA, Viral.
- geographic , epidemiology : Slovenia.
- classification : Coronavirus.
- epidemiology : Coronavirus Infections.
- genetics : Coronavirus.
- isolation & purification : Coronavirus, RNA, Viral.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections, Feces.
- Animals, Cluster Analysis, Molecular Sequence Data, Phylogeny, Prevalence, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Sequence Homology.
Abstract
Abstract: Bats have been identified as a natural reservoir for an increasing number of emerging zoonotic viruses, such as Hendra virus, Nipah virus, Ebola virus, Marburg virus, rabies and other lyssaviruses. Recently, a large number of viruses closely related to members of the genus Coronavirus have been associated with severe acute respiratory syndrome (SARS) and detected in bat species. In this study, samples were collected from 106 live bats of seven different bat species from 27 different locations in Slovenia. Coronaviruses were detected by RT-PCR in 14 out of 36 horseshoe bat (Rhinolophus hipposideros) fecal samples, with 38.8% virus prevalence. Sequence analysis of a 405-nucleotide region of the highly conserved RNA polymerase gene (pol) showed that all coronaviruses detected in this study are genetically closely related, with 99.5–100% nucleotide identity, and belong to group 2 of the coronaviruses. The most closely related virus sequence in GenBank was SARS bat isolate Rp3/2004 (DQ071615) within the SARS-like CoV cluster, sharing 85% nucleotide identity and 95.6% amino acid identity. The potential risk of a new group of bat coronaviruses as a reservoir for human infections is highly suspected, and further molecular epidemiologic studies of these bat coronaviruses are needed.
Url:
- https://api.istex.fr/ark:/67375/VQC-WFPL0816-R/fulltext.pdf
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7087122
DOI: 10.1007/s00705-010-0612-5
Affiliations:
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Le document en format XML
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Recently, a large number of viruses closely related to members of the genus Coronavirus have been associated with severe acute respiratory syndrome (SARS) and detected in bat species. In this study, samples were collected from 106 live bats of seven different bat species from 27 different locations in Slovenia. Coronaviruses were detected by RT-PCR in 14 out of 36 horseshoe bat (Rhinolophus hipposideros) fecal samples, with 38.8% virus prevalence. Sequence analysis of a 405-nucleotide region of the highly conserved RNA polymerase gene (pol) showed that all coronaviruses detected in this study are genetically closely related, with 99.5–100% nucleotide identity, and belong to group 2 of the coronaviruses. The most closely related virus sequence in GenBank was SARS bat isolate Rp3/2004 (DQ071615) within the SARS-like CoV cluster, sharing 85% nucleotide identity and 95.6% amino acid identity. The potential risk of a new group of bat coronaviruses as a reservoir for human infections is highly suspected, and further molecular epidemiologic studies of these bat coronaviruses are needed.</div></front></TEI><affiliations><list><country><li>Slovénie</li></country></list><tree><country name="Slovénie"><noRegion><name sortKey="Rihtari, Danijela" sort="Rihtari, Danijela" uniqKey="Rihtari D" first="Danijela" last="Rihtari">Danijela Rihtari</name></noRegion><name sortKey="Grom, Joze" sort="Grom, Joze" uniqKey="Grom J" first="Jože" last="Grom">Jože Grom</name><name sortKey="Hostnik, Peter" sort="Hostnik, Peter" uniqKey="Hostnik P" first="Peter" last="Hostnik">Peter Hostnik</name><name sortKey="Steyer, Andrej" sort="Steyer, Andrej" uniqKey="Steyer A" first="Andrej" last="Steyer">Andrej Steyer</name><name sortKey="Toplak, Ivan" sort="Toplak, Ivan" uniqKey="Toplak I" first="Ivan" last="Toplak">Ivan Toplak</name><name sortKey="Toplak, Ivan" sort="Toplak, Ivan" uniqKey="Toplak I" first="Ivan" last="Toplak">Ivan Toplak</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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